pascalhabluetzel

grifo

GRIFO is an analysis pipeline for nanopore metabarcoding sequence data

CDS-miner

CDS-miner aligns a list of query CDS in fasta format to a genome assembly in order to retrieve similar CDS above a specific threshold. Results are stored in fasta format. It works for eukaryote genomes with intron-exon structure.

gbif_playground

Some isolated scripts that might be useful when dealing with GBIF data

Stickleback-parasites-2016

GEANS_WP4_dwca

This repository has example data and code to produce occurrence and ASV tables from Illumina metabarcoding data using DADA2.

metaVaR

R package for reference-free and metagenomic-based population genomic analysis

Type_localities_Bolivian_fishes

This is a list of type localities of all nominal taxa of fishes within the borders of Bolivia. Geographic coordinates are sourced from the literature or, if not available, georeferenced using a standardized procedure.

useful_short_scripts

A collection of short scripts that do useful stuff for bioinformatics and biodiversity informatics.