parkcc

Awesome-Bioinformatics

A curated list of awesome Bioinformatics libraries and software.

oneliners

Useful bash one-liners for bioinformatics.

training-collection

Collection of bioinformatics training materials

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

An-Introduction-To-Applied-Bioinformatics

Interactive lessons in bioinformatics.

learning-bioinformatics-at-home

resources for learning bioinformatics

containers

Bioinformatics containers

awosome-bioinformatics

A curated list of resources for learning bioinformatics.

bioinformatics-workflows

minimal example implementations for bioinformatics workflow managers

TeachingDemos

Bioinformatics related demos and tutorials using the R programming language

Bioinformatics-Workshops

Workshops presented by the Gladstone Bioinformatics Core

souporcell

Clustering scRNAseq by genotypes

shinyCircos

an R/shiny application for creation of Circos plot interactively

Useless_R_functions

Useless R Functions. That's it

omicsplayground

Visual self-service analytics platform for big omics data.

rabix

[Historical] Reproducible Analyses for Bioinformatics

R-Bioinformatics-Cookbook

R Bioinformatics Cookbook, published by Packt

kmersGWAS

A library for running k-mers based GWAS

STARTapp

The START App: R Shiny Transcriptome Analysis Resource Tool

submissions-pilot1-to-fda

eCTD package for pilot1 submission to FDA

rtrs-wg

R Tables for Regulatory Submissions Working Group

R-for-bioinformatics

R course for bioinformatics

CSBB-Shiny

Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis

RNA-seq-downstream-analysis

Arabidopsis RNA_-seq downstream analysis shiny app

IRIS

A Shiny web server for interactive visualization and analysis of RNA-seq data

ClusterProfShinyGSEA

A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries

Shiny-Seq

Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data

shinyDE

Web server for all differential expression (DE) callers

adam_analysis

RNAseq_DESeq2_workshop

RNAseq workshop courses and materials