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rTPC

R package to help fit Thermal Performance Curves

nls.multstart

Non-linear regression in R allowing multiple start parameters

bartlett_et_al_2022_human_pathogens

BrewerUoE

Use University of Exeter Colour Schemes Easily in R

EdenMicrobes

Data and analysis of projects related to microbes at the Eden Project.

Lear_et_al_2022_stoten

Code and analysis for: Lear et al. (2022) Bacterial colonisation dynamics of household plastics in a coastal environment. Science of the Total Environment

padpadpadpad

dada2_pipeline_R

Pipeline for running sequencing analyses using dada2

2023_ecehh_openscience

BayesTraitsAcrAllNodes

Example of how to reconstruct all ancestral nodes using BayesTraits

blogdown_source_old

Repository to store blown source content

Castledine_2022_frontiers

Castledine_et_al_2018_JEB

data, analyses and figures from Castledine et al. (2018) JEB

docker-treepl

Dockerfile for treePL

engsoccerdata

English and European soccer results 1871-2020

five_species_community

Processed data and scripts from the work describing a stable five species community.

five_species_community_paper

Processed data and code for paper describing 5-species microbial community

myxo_diversification

Processed data and code for the project exploring the macroevolution of Myxobacteria in natural environments.

Padfield_2019_ISME_bact_phage_temperature

Data and analysis from manuscript titled: Temperature-dependent changes to host-parasite interactions alter the thermal performance of a bacterial host

Padfield_2020_ISME_preadaptation_diversity_effect

Code and data to recreate analysis from Padfield et al. (2020) ISME: Evolution of diversity explains the impact of pre-adaptation of a focal species on the structure of a natural microbial community.

padpadpadpad.github.io

Repository for my blogdown site available at:

padpadpadpad_quarto

source code for my personal/lab website

rstanarm

rstanarm R package for Bayesian applied regression modeling

sangeranalyseR

functions to analyse sanger sequencing reads in R

shinyDistanceBias

Avoiding biased density estimates: a simulation model to estimate and correct for distance sampling in human avoidant animals

starter-academic

survival_curve_methods

TidyTuesday

vanHoute_et_al_2020_JEB

Final code and and datasets to recreate analysis from van Houte et al. (2020) JEB: Compost spatial heterogeneity promotes evolutionary diversification of a bacterium

vcfR

Tools to work with variant call format files