pablormier

yabox

Yet another black-box optimization library for Python

kaggle-lish-moa-annotated

LISH-Harvard Mechanism of Action (MoA) Kaggle's dataset with annotations

awesome-math

A curated list of awesome mathematics resources

pancancer

Building classifiers using cancer transcriptomes across 33 different cancer-types

BNGPU

Scaling structural learning with NO-BEARS

causalbench

causality_perspective_2023

cobra306

A small version of COBRA Toolbox 3.0.6 with no submodules

cobratoolbox

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

computation-thru-dynamics

Understanding computation in artificial and biological recurrent networks through the lens of dynamical systems.

corneto

CORNETO: an optimization library for modeling biological network inference problems

corneto-web

covid-19

A collection of work related to COVID-19

DGE_workshop

DGE_workshop_salmon

dslibro

Repositorio para el libro de ciencia de datos.

HSE545

POSTECH ME Machine Learning, Prof. Seungchul Lee

LEMBAS

enables genome-scale simulation of intracellular signaling

liana-py

LIANA: a LIgand-receptor ANalysis frAmework

mcmc-demo

Interactive Markov-chain Monte Carlo Javascript demos

metabolomics-ORA

Code for simulations in "Pathway analysis in metabolomics: Pitfalls and best practice for the use of Over-representation Analysis" Wieder et al. (manuscript in preparation)

miom-gems

Lightweight versions of common genome scale metabolic models using miom format

mkdocs-deploy-gh-pages

GitHub Action to deploy an MkDocs site to GitHub Pages

omnipath-static

Omnipath static versions

pablormier.github.io

Personal webpage

PlotNeuralNet

Latex code for making neural networks diagrams

RAVEN

The RAVEN Toolbox for genome scale model reconstruction, curatiopn and analysis.

resources

scRNA-seq

self-organising-systems