The Metabolic Profiling and Metabolomic Platform's repositories
tp-big-data-scala-spark-sansa
TP RDF/Spark/Scala pour l'Atelier Big Data INRAE 2023
discovery
Discovery provides a powerful toolset for developers who are looking to build UIs using RDF data in an a robust software development process
hubportal
The P2M2 Central Hub serves as the centralized gateway to the dematerialized tools developed by the P2M2 metabolomics platform
ihm-githubio-gcms2isocor
provides a simple interface for ingesting gcms files and integrating these results into isocor format
mgf-p2m2-tools
Scala parser for generic MGF mascot files containing MS/MS data
msd-datalake-builder
Builds an RDF data repository from multiple HDFS/RDF sources by applying OWL Horst inference
mzxml-glucosinolate-analyser
Ion detection eligible for characterization of glucosinolate and phenolic metabolites
oligopeptides_matching
In order to compute from amino acids molecular weight the putative oligomers of various oligomerization degree
positional-carbon13-enrichment
Positional 13C-enrichments were calculated by combining mean 13C-enrichments of multiple fragments that shared part of the same carbon backbone
service-p2m2tools-api
Service to parse the formats of the metabolomics data acquisition devices of the P2M2 platform
ci-r-base-devtools
docker image P2M2 CI/CD
docker-XcmsViewer
Dockerized XcmsViewer
facade-scalajs-axios
Scala js facade
facade-scalajs-comunica-query-sparql
Scala.js Facade of the Comunica SPARQL RDFJS Init Actor
facade-scalajs-data-model-rdfjs
Scala.js lib of the RDF/JS Representation (https://github.com/rdfjs/data-model-spec)
facade-scalajs-N3.js
ScalaJS facade to build N3.js application
facade-scalajs-rdfxml-streaming-parser
Scala.js Facade of the RDF/XML Streaming Parser library
forum-diseases-chem-nextflow
Nextflow scripts to generate a release of the FORUM project
p2m2-amonite-mass-library
Library to pre-process and process files used in metabolomics (mgf, mzxml,...)
service-flask-thermorawfileparser-openms
A simple HTML interface for converting RAW format to MzML, MzXML, and MGF files.
stream-reader-mzxml
A Scala library specializing in stream processing of mzXML files, based on FS2
tools-metabolomics
Galaxy tools for metabolomics maintained by Workflow4Metabolomics
workflow-kg-plants-taxon-compound
A workflow that generates a knowledge graph from a list of DOIs using the tool '# End-to-end Relation Extraction on the natural-product literature' from IDIAP.