Will Probert's repositories
como_command_line
Scripts to run the CoMo model as a basic R script and pair with various calibration approaches
voting_systems
Vote-processing rules used in elections, here applied to output from epidemiological models. Defined rules are: first-past-the-post, Borda Count, Coombs Method, Alternative Vote.
closing_gaps_arm_c
Closing gaps analysis for arm C communities
comoOdeCpp
Implements CoMo Consortium's COVID-19 transmission model in Rcpp.
covid19_r_map_ew
Illustration of a map of England and Wales in R using data on R(t) from LocalCovid19Tracker
Elicitation-1
MMODS Elicitation 1: COVID-19 reopening strategies at the county level in the face of uncertainty
fitode
general purpose ODE fitting tool in R
german-nouns
A list of ~100,000 German nouns and their grammatical properties compiled from WiktionaryDE as CSV file. Plus a module to look up the data and parse compound words.
Individual-based-model-for-HIV-among-FSWs-and-their-clients
Code for the paper: "HIV incidence and impact of interventions among female sex workers and their clients in the Middle East and North Africa: Mathematical modelling analysis"
POPART-IBM
C code of the individual-based model developed as part of the HPTN071 (PopART) trial
rl_mountain_car
Mountain car example of reinforcement learning
scalene
Scalene: a high-performance, high-precision CPU, GPU, and memory profiler for Python
SM-ExpFam-LFI
Code for the paper: "Score Matched Conditional Exponential Families for Likelihood-Free Inference", https://jmlr.org/papers/v23/21-0061.html
smart-hiv
WHO SMART Guidelines Content Implemntation Guide for HIV
smart-ig-empty
Empty IG for make new SMART Guidelines
synthetic-contact-matrices
Updates to the synthetic contact matrices
voting_systems_epi_analysis
Applying vote processing rules to output from multiple epidemiological models