ozborn

John Osborne's repositories

Clinical Reasoning Ontology

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Code for AMIA 2020 Paper "Identification of Gout Flares in Chief Complaint Text Using Natural LanguageProcessing"

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A collection of utilities for manipulating data and calculating inter-annotator agreement in brat annotation files.

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ClearTK tutorials

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Deep Learning for Java, Scala & Clojure on Hadoop, Spark & GPUs

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Please use these examples based on deeplearning4j 0.4.* release.

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Java UIMA tools to handle analysis of BRAT annotations.

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The PhysioNet Data Use Agreement and License

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Schema at the University of Alabama at Birmingham for storing the results of Clinical NER

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Fast, Scientific Computing for the JVM (NDArrays)

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Oxford Deep NLP 2017 course - Practical 1: word2vec

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Type system and some annotators related to semeval NER tasks

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Standalone UiServer for DeepLearning4j

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Short code to do some simple indexing of UMLS.

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Word2Vec Java Port

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