ostrokach

proteinsolver

Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.

csc343-ta-notes

Interactive tutorial notebooks for CSC343 - Introduction to Databases.

drug-combinations

Predicting synergistic drug combinations.

drug-combinations-az

Predicting synergistic drug combinations in the AstraZeneca-Sanger drug combination prediction DREAM challenge.

protein-adjacency-net

Classifier trained to predict whether a protein sequence matches an adjacency network and a GAN trained to fool the classifier.

uniparc_xml_parser

UniParc dataset describing ~300 million protein sequences converted into relational tables accessible through Google BigQuery (and as Parquet files).

2021

aa_subtypes

Code for the preprint: Exploring amino acid functions and positional subtypes in a deep mutational landscape

alphafold

Open source code for AlphaFold.

apache-beam-feedstock

A conda-smithy repository for apache-beam.

beam

Apache Beam

beam-notebooks

bioconda-recipes

Conda recipes for the bioconda channel.

cookiecutter-pypackage

Cookiecutter template for a Python package.

cpython

The Python programming language

csc343-jdbc-practice

Examples of using jdbc to access PostgreSQL

datathon_2018

docker-images

Repository to host the Docker images files used in conda-forge

ENCoM

Coarse-grained Normal Mode Analysis software

funnel

Funnel is a toolkit for distributed task execution via a simple, standard API.

msaview

ostrokach

python-markdown-math

Math extension for Python-Markdown

python-ta

rgn

Recurrent Geometric Networks for end-to-end differentiable learning of protein structure

scihub-manuscript

Manuscript for the Sci-Hub Coverage Study

tabula-java

Extract tables from PDF files

vuepress

📝 Minimalistic Vue-powered static site generator

winter

WInte.r is a Java framework for end-to-end data integration. The WInte.r framework implements well-known methods for data pre-processing, schema matching, identity resolution, data fusion, and result evaluation.

xssp

Create DSSP and HSSP files