ostash-group / GeneticPlotter

A tool with nice GUI to visualize the codon usage frequencies in whole genomes

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Genetic Plotter

Visitor count GitHub GitHub issues GitHub Repo stars GitHub contributors

Genetic Plotter is an application with comfortable and friendly (easy-to-use) graphical user interface. The application allows to conduct some types of genetic data analysis and visualize the result. Now one method of data analysis is available. Written in Python with using PyQt5. More features will be added in future.

Screenshots of Genetic Plotter

img1 img3 img2 img4

Features:

-Can open more then one genome file at same time

-Can make calculations with triplets and tetraplets or any other subsequences

-Can use color selector for curves in a chart

-Can use additional options for curves in a chart (count of points)

-Can save charts as images ( two formats are avaible - PNG and JPG)

Author

The tool was created by Serhii Silov. Contact e-mail: serhiisilov@gmail.com

Citation

Genetic Plotter was used in the following paper: Silov, S., Zaburannyi, N., Anisimova, M. et al. The Use of the Rare TTA Codon in Streptomyces Genes: Significance of the Codon Context?. Indian J Microbiol 61, 24–30 (2021). https://doi.org/10.1007/s12088-020-00902-6

About

A tool with nice GUI to visualize the codon usage frequencies in whole genomes

License:MIT License


Languages

Language:Python 100.0%