orzechoj

orzechoj's repositories

Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).

Language:PerlMIT16 5 2

PIQ DNA footprinting. Cloned from https://bitbucket.org/thashim/piq-single

Language:R2 2 4

Analysis of RNA-seq and DNA methylation data for paper by Cedernaes et al. 2018

Language:HTML1 10

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

Language:PerlGPL-3.0020

Nextflow ChIP-seq data analysis pipeline, National Genomics Infrastructure, Science for Life Laboratory in Stockholm

Language:GroovyMIT020

OnPLS: Orthogonal Projections to Latent Structures in Multiblock and Path Model Data Analysis

Language:PythonBSD-3-Clause020

Some toy examples in R, illustrating tools for genomics.Part of presentation in R user group meetup

Language:R020