Oscar Ortega's repositories
pypi-upload-action
Github action to upload a python package to PyPI
arviz
Exploratory analysis of Bayesian models with Python
bmif_6319_class
Jupyter notebooks for BMIF 6319 class
conda-package-publish-action
Github Action to deploy conda package to Anaconda repository
cytoscape-jupyter-widget
Cytoscape.js based network visualizer for Jupyter Notebook
cytoscape-sbgn-stylesheet
View biological networks via Cytoscape.js and sbgn-ml
earm_pydyno
Analysis of dominant reaction rates of the extrinsic apoptosis reaction model (EARM) under different initial conditions
jarm_discretization
Analysis of JARM
kmedoids
The Python implementation of k-medoids.
pydream_it
Read PySB models and generate a script for PyDREAM calibration
pydyno_paper
Repo of pydyno with 3 different example models
pyvipr
Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
sif.js
A javascript library to parse simple interaction file (SIF) files
simplePSO
Particle Swarm Optimization algorithm in Python
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
vanderbilt-aspire-data-essentials
8 week introduction to data science