orion-cirb

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Collège de France

Paris

http://orion-cirb.fr/

Image analysis facility's repositories

NeuN_CFos

Language:Java100

Emma_Bacteria

Language:Java100

Astrocytes_InOut_Vessels

Language:Java100

Stardist_Notebooks

Jupyter notebooks to train Stardist models

Language:Jupyter Notebook200

Orion_Macros

Some ImageJ/Fiji useful macros

Language:ImageJ Macro100

Orion_QuPath_Scripts

Some QuPath useful scripts

Language:Groovy100

Ovocyte_Nucleus

Language:Java100

DNA_in_bacteria

Find DNA in bacteria

Language:Java100

Spheroid_Expansion

Language:Java100

Vessel_IB4

Language:Java100

QuPath_Megakaryocytes_Neutrophils

Language:Groovy100

DNA_In_Border_Bacteria

Language:Java100

RNA_In_Astro_Vessels

Language:Java100

QuPath_DAB_Brain_Tumor

Language:Groovy100

QuPath_DAB_Heart_Lung

Language:Groovy100

Galanin_Mafa

Language:Java100

Astro_Oxytocin

Language:Java100

3DSkel

Language:MATLAB100

QuPath_Isolectine_Heart

Language:Groovy100

RNA_PECAM_DAPI

Language:Java100

qupath-extension-cellpose

Language:Jupyter NotebookApache-2.0100

RNA_Scope_Nerve

Language:Java100

NeuN_IBA1_Astro_Prots

Language:Java100

SFPQ_Nuclei_Overlap

Language:Java100

QuPath_Emeu

Language:Groovy200

Foci_in_bacteria

Language:Java100

Spheroid_Endothelium

Language:Java200

MNP9_NeuN_PV

Language:Java100

Vessel_Scope_IB4

Language:Java100

Granule_Cells3D

In 3D images of granule cells, count nuclei

Language:Java100