- Developed for: Iris
- Team: Germain
- Date: May 2023
- Software: Fiji
2D images of sections of mouse heart taken with a x20 objective.
2 channels:
- CSU_561: Dextran
- CSU_635: Isolectin
- Detect vessels in isolectin channel with Gaussian blur filtering + Huang thresholding
- Fill in dark isolectin mask in dextran channel
- Detect extravasated dextran in dextran channel with Gaussian blur filtering + Otsu thresholding
- Give isolectin and extravasated dextran masks areas
Version 1 released on May 30, 2023.