orion-cirb / Gal_Mafa_CFos

Gal_Mafa_CFos

• Developed for: Laure
• Team: Rouach
• Date: November 2023
• Software: Fiji

Images description

3D images taken with a x25 objective on a spinning-disk microscope.

3 channels:

1. CSU_488: GFP-Galanin cells
2. CSU_561: c-Fos cells
3. CSU_642: Mafa cells

Plugin description

• Detect Galanin cells with Stardist
• Compute background noise for each channel
• Give Galanin cells background-corrected intensity in Galanin, c-Fos and Mafa channels

Dependencies

• 3DImageSuite Fiji plugin
• Stardist DSB2018.zip model

Version history

Version 1 released on November 30, 2023.