oqe's repositories
Bringing-the-Power-of-Synthetic-Data-Generation-to-the-Masses
We aim to make it easier for biomedical researchers to access and customize synthetic sequence data for the purpose of sharing and testing analysis methods as well as training and collaboration
gatk4-exome-analysis-pipeline
This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and Indel discovery in human exome sequencing data.
gatk4-germline-snps-indels
Workflows for germline short variant discovery with GATK4
gatk4-germline-snps-indels-1
Workflow for germline short variant discovery using GATK4
IODS-project
Template for the IODS course
presentations
Presentations
single-exome-sample-variant-priorization
Nextflow workflow for extracting (human) single sample from a larger exome sequencing multisample/cohort VCF and annote and prioritize exome variants of that sample
wdlRunR
Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources