openvax / gtfparse

Parsing tools for GTF (gene transfer format) files

openvax/gtfparse Issues

ImportError: cannot import name table_to_blockmanager
Updated 2 months ago1
Update gtfparse to support pyarrow >=0.15
Updated 2 months ago
consider switching to pytest
Closed 4 months ago2
Read_gtf but no write_gtf?
Updated 4 months ago5
Fix bug for records with ";" in the value
Updated 6 months ago
Bioconda wrong dependencies for version 2.1.0
Updated 7 months ago
read_gtf has ERROR "scan_csv() got an unexpected keyword argument 'sep'"
Updated 7 months ago9
BackTrace for exception when parsing gtf file
Updated 7 months ago1
Incompatible with polars version >=0.17 due to usage of polars.toggle_string_cache
Closed 7 months ago4
Please do not use logging basicConfig for library software
Updated 10 months ago
How to iter a huge gtf file line by line ?
Updated a year ago
Conversion to Pandas in read_gtf has missing dependency
Updated a year ago
Add `features=features` otherwise feature argument is not used.
Closed 2 years ago3
FutureWarning
Closed 2 years ago
Attribute parsing fix
Updated 3 years ago
gtfparse.parsing_error.ParsingError: Integer column has NA values in column 3
Updated 4 years ago
Recursion error while parsing gtf
Closed 5 years ago2
The column names are not correct
Updated 6 years ago
util.py Depends on resource
Closed 6 years ago3
Example of how to find a feature by gene_id or transcript_id
Updated 6 years ago
Tika Parser
Closed 6 years ago3
Tag annotations ignored when multiple are present
Closed 6 years ago1