openalea-incubator / adel

Characterization of 3D plant development for graminae crops

Alinea.Adel

Authors : C. Fournier, C. Pradal, B. Andrieu

Contributors :

• M Abichou (wheat parameteristion, documentation, plantgen),
• C Chambon (plantgen, documentation, povray, fit, io widgets)

Institutes : INRA, CIRAD

Status : R and Python package (+ L-system)

License : Cecill-C

About

Description

Alinea.Adel (Architectural model of DEvelopment based on L-systems) allows to simulate the 3D architectural development of the shoot of gramineaous plant.

Content

The package hosts generic data structure and simulation tools for gramineaous plants(Fournier & Pradal, unpublished), the Adel-Maize (Fournier & Andrieu, 1998), Adel-Wheat (Fournier et al. 2003) models, together with the wheat parameterisation model of Abichou et al. (2013) and the plastic leaf model of Fournier & Pradal (2012)

Installation

python setup.py install

Requirements

• OpenAlea.Deploy
• OpenAlea.Mtg
• OpenAlea.core
• OpenAlea.visualea
• OpenAlea.PlantGl
• NumPy
• Scipy
• MatplotLib
• Pandas
• Rpy2

Installation with conda or mamba

Create an environment (either use mamba or conda):

mamba create -n adel -c conda-forge -c openalea3 alinea.adel -y

Activate the environment:

conda activate adel

Installation from source

Create an environment

mamba create -n adel -c openalea3 -c conda-forge alinea.adel --only-deps -y

Install adel

git clone https://github.com/openalea-incubator/adel.git
cd adel
python setup.py develop