openMetadataInitiative's repositories
openMINDS_core
The openMINDS core metadata model includes schemas that can be used to describe the general origin, location and content of research products.
openMINDS_SANDS
A metadata model capturing Spatial Anchoring of Neuroscience Data Structures, including brain atlas definitions.
openMINDS_controlledTerms
Metadata model for the consistent registration of well-defined terms as well as a corresponding library of terminologies (including links to ontological terms where applicable).
openMINDS_ephys
A metadata model for capturing in-depth descriptions of electrophysiology experiments.
openMINDS_chemicals
A metadata model for capturing in-depth descriptions of chemical substances and mixtures.
openMINDS_LinkML
Complete collection of schemas for the metadata models of the openMINDS metadata framework. All schemas are formatted in LinkML (*.yaml).
openMINDS_MATLAB
MATLAB package for the openMINDS metadata models. The package contains all openMINDS schemas as MATLAB classes in addition to schema base classes and utility methods
openMINDS_specimenPrep
A metadata model capturing in-depth descriptions of specimen preparations.
openMINDS_stimulation
A metadata model capturing in-depth descriptions of stimuli and stimulation protocols in neuroscience.
openMINDS_documentation
Read-The-Docs documentation for the openMINDS metadata framework.
openMINDS_instances
Well defined metadata instances for selected schemas of the openMINDS metadata models.
openMINDS_Java
A Java library for openMINDS
openMINDS_JSON-Schema
Complete collection of schemas for the metadata models of the openMINDS metadata framework. All schemas are formatted in JSON-Schema (*.schema.json).
openMINDS_publications
A metadata model for scholarly publications in neuroscience, including live papers
openMINDS_Python
Python package for the openMINDS metadata models. The package contains all openMINDS schemas as Python classes in addition to schema base classes and utility methods.
.github
README repository for openMetadataInitiative organization.
bids2openminds
A tool to generate openMINDS metadata from BIDS datasets
openMINDS_computation
A metadata model for simulation, data analysis and visualization provenance in neuroscience
openMINDS_MRI
A metadata model for MRI experiments; an openMINDS extension