open-AIMS / bayesnec

Bayesian No-Effect-Concentration estimation in R

https://open-AIMS.github.io/bayesnec

open-AIMS/bayesnec Issues

Plots not displaying in the pkgdown website
Closed 9 months ago1
note precision is resolution in brms argument terminology
Closed a year ago
xform in autoplot does not behave as expected for binomial
Closed a year ago
ECx type abolsute does not behave as described in the help file
Closed a year ago1
Consider adding decision rules to fit beta_binomial and negativebinomial to overdispersed binomial and poisson data automatically
Updated a year ago
Check all functions work with cmdstanr backend
Closed a year ago1
add native beta_binomial family
Closed a year ago
Add more diagnostic methods and tests for bayesnecfit objects
Updated a year ago1
Function get priors
Updated a year ago
Support for `rate` aterm would be really useful for Poisson and Negbinom families
Updated 2 years ago1
Add NEC models from drc
Updated 2 years ago
provide information on failed models
Updated 2 years ago
Model set excluidng necsigm
Closed 2 years ago
Added new model set 'hormesis'
Closed 2 years ago1
Summary returning wrong Data name
Closed 2 years ago
Add method to extract brms object
Closed 2 years ago1
Provide additional error checking to exported functions
Closed 2 years ago1
Proof read man pages.
Closed 2 years ago
Strip _Intercept frm summary output
Closed 2 years ago
investigate how to combine help files into one
Closed 2 years ago
Should we allow merging of bnec-generated objects with different x/y transformations?
Closed 2 years ago
`predict` method needs to be broken down into multiple functions
Closed 2 years ago
Replace `all_models` argument in new `predict`, `plot` and `autoplot` methods for `bayesmanecfit` objects
Updated 2 years ago
validate_priors code logic
Closed 2 years ago1
Thorough check of functions dependencies
Closed 2 years ago1
Consider replacing `%>%` for new native `|>`
Closed 2 years ago
test-nsec.R unexpected original code
Closed 2 years ago1
The need for `precision` as an attribute in `ecx`, `nsec`, etc outputs
Closed 2 years ago1
Provide examples for `predict` and `posterior_*` methods
Closed 2 years ago
Provide examples for `bnec_newdata`
Closed 2 years ago
Add examples to all exported methods/generics
Closed 2 years ago
Reorganise functions
Closed 2 years ago
Add seed to all model calls in vignettes
Closed 2 years ago1
get rid of `ifelse` statement related to `xform` in plot
Closed 2 years ago1
Standardise `xform` default values + checks across functions that have it
Closed 2 years ago1
Is `force_x` truly needed in plot?
Closed 2 years ago
Implement new tests for predict et al. methods
Closed 2 years ago1
Standardise output names among functions ecx, nec, nsec
Closed 2 years ago1
c(mod, mod) returning error
Closed 2 years ago
Message when concantenating models of the same fit
Closed 2 years ago2
Add axis label to check_chains()
Closed 2 years ago1
Argument xform in autoplot does not behave as expected
Closed 2 years ago1
add zero-inflated Poisson/negative binomial distributions
Updated 2 years ago1
Issues with next version of ggplot2
Closed 2 years ago3
ecx_incline model set for drug discovery
Closed 2 years ago
Auto-correct when check_data applies shifts from 0 and 1
Updated 3 years ago2
Check for an overall decline in the response not working as intended
Closed 3 years ago
Update check_data resp_check to use quantiles
Closed 3 years ago2
CRAN test failures on Linux and Windows
Closed 3 years ago
Poisson model produces error
Closed 3 years ago