onlyonewater

virtualhome

API to run VirtualHome, a Multi-Agent Household Simulator

alphafold_non_docker

AlphaFold2 non-docker setup

CDPred

Deep transformer for predicting interchain residue-residue distances of protein complexes

CLIP4Clip

An official implementation for "CLIP4Clip: An Empirical Study of CLIP for End to End Video Clip Retrieval"

CoevolveML

Deploying synthetic coevolution and machine learning to engineer protein-protein interactions

CoGANPPIS_source_code

dcdi

Repository for "Differentiable Causal Discovery from Interventional Data"

DeepInteract

A geometric deep learning pipeline for predicting protein interface contacts.

Diff-SCM

Code for Diff-SCM paper

DIPS-Plus

The Enhanced Database of Interacting Protein Structures for Interface Prediction

equidock_public

EquiDock: geometric deep learning for fast rigid 3D protein-protein docking

GraphPPIS

Protein-protein interacting site predictor using deep graph convolutional network

GraphPPIS-preprocess

mae

PyTorch implementation of MAE https//arxiv.org/abs/2111.06377

MiniGPT-4

MiniGPT-4: Enhancing Vision-language Understanding with Advanced Large Language Models

NCMCounterfactuals

NeuralCausalModels

Neural Causal Model (NCM) implementation by the authors of The Causal Neural Connection.

notears

DAGs with NO TEARS: Continuous Optimization for Structure Learning

OntoProtein

Code and datasets for the ICLR2022 paper "OntoProtein: Protein Pretraining With Gene Ontology Embedding"

PPITrans

ProtTrans

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

pytorch-ddpm

Unofficial PyTorch implementation of Denoising Diffusion Probabilistic Models

pytorch-distributed

A quickstart and benchmark for pytorch distributed training.

pytorch-lightning-template

An easy/swift-to-adapt PyTorch-Lighting template. 套壳模板，简单易用，稍改原来Pytorch代码，即可适配Lightning。You can translate your previous Pytorch code much easier using this template, and keep your freedom to edit all the functions as well. Big-project-friendly as well.

PyTorch-VAE

A Collection of Variational Autoencoders (VAE) in PyTorch.

QD-DETR

Official pytorch repository for "QD-DETR : Query-Dependent Video Representation for Moment Retrieval and Highlight Detection" (CVPR 2023 Paper)

RoseTTAFold

This package contains deep learning models and related scripts for RoseTTAFold

ScanNet

SindyAutoencoders

virtualhome_unity

Source Code for VirtualHome environment