onecodex / taxonomy

Python and Rust library for loading, saving, and manipulating taxonomic trees

Repository from Github https://github.comonecodex/taxonomy

onecodex/taxonomy Issues

No source distribution for Taxonomy 0.10.0 or wheels for any version with Python 3.12
Closed a year ago2
Newick output does not contains TaxIDs or scientific names
Closed a year ago3
Taxonomy from python nested dictionary
Closed 2 years ago2
Cannot set parent id to "1" root
Closed 2 years ago1
Panic when adding a node to a child
Closed 2 years ago7
Loading UHGG taxonomy fails
Updated 4 years ago1
Fix JSON data format sniffer
Closed 4 years ago
Python docs?
Closed 5 years ago1
Support getting all data for a node
Closed 5 years ago1
Support looking up nodes by name
Closed 5 years ago1
Release new version
Closed 5 years ago1
Use maturin for build process
Closed 5 years ago
Expose `maximum_weight_path` in Python API
Closed 5 years ago1
Weight Methods and Cleanup
Closed 5 years ago
Better editing support
Closed 5 years ago
GeneralTaxonomy.tax_id_lookup should be no copy
Updated 5 years ago
Re-rooting
Updated 5 years ago
`__getitem__` and `__setitem__` format
Updated 5 years ago
NEXUS support
Updated 5 years ago1
Newick tree should support Unicode
Closed 5 years ago2
Fast visualization method
Updated 5 years ago
Taxonomy merging
Updated 5 years ago
Distances in JSON output
Updated 5 years ago
Crate v0.3.3 may not install with stable
Closed 5 years ago
`traverse` can be slow
Closed 5 years ago9
Create Linux wheels
Closed 6 years ago5
Import issue breaks mg
Closed 8 years ago1