omsai

git-swc-worksheet

Worksheet for Software Carpentry Git lesson

git-novice

Software Carpentry introduction to Git for novices.

git_intro

R-in-git

cellgen

Generate TIF images for simulating experiment with CellProfiler / CellProfiler-Analyst.

2019-01-14-uconn

Rendering of the R Bioconductor workshop site

2020-02-13-python-signal-processing

cellprofiler-hpc-scripts

End-to-end Makefiles and scripts for processing image data with CellProfiler

countries

Toy repository for teaching how to make pull requests in GitHub

docs

Online documentation for Stan language and platform

dREG

Detecting Regulatory Elements using GRO-seq and PRO-seq

guacamole

Software carpentry git workshop at JAX

imagej.github.io

The ImageJ wiki

mpiabc

Toy MPI implementation of parameter fitting using approximate Bayesian computing (ABC) with sequential Monte Carlo (SMC) sampling

mpiboostunit

Toy MPI program using Boost MPI and GoogleTest

mpithread

Toy MPI programs with threading to debug SLURM scheduler misbehavior

openzfs-docs

OpenZFS Documentation

org-kanban

Kanban table for org-mode

pages-gem

A simple Ruby Gem to bootstrap dependencies for setting up and maintaining a local Jekyll environment in sync with GitHub Pages

Physcomitrellopsis_africana5074

podget

Podcast aggregator optimized for running as a scheduled job (i.e. cron) on Linux

publicfilesdemo

pyABC

distributed, likelihood-free inference

rse-stories

What is an RSE? What is your story? By sharing stories, we can better understand what it means to be a research software engineer.

spack

A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

spatialdata

An open and interoperable data framework for spatial omics data

stat-5361

Statistical computing notes

svg2psp

R package providing a set of function to convert SVG files into spatstat psp objects

swc_git

Guacamole recipe for workshop

un-report