gnomix's repositories
cli-bioinformatics-tools
common programming tricks to extract/modify data
ComplexHeatmap
Make Complex Heatmaps
conda-envs
conda environments
LLM-training
training LLMs
autogen-Feb5th2024
ForkedAutogen
aws-utilities
aws cli common commands
bagel-March29th2024
A bagel, with everything.
BASH
data_manipulation_1
funannotateJan18th2023
Eukaryotic Genome Annotation Pipeline
hyena-dna
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
job-arrays
example job arrays to process sequence data
litellm
Call all LLM APIs using the OpenAI format. Use Bedrock, Azure, OpenAI, Cohere, Anthropic, Ollama, Sagemaker, HuggingFace, Replicate (100+ LLMs)
LLaVA-Apr10th2024
[NeurIPS'23 Oral] Visual Instruction Tuning (LLaVA) built towards GPT-4V level capabilities and beyond.
mamba-minimal-March28th2024
frozen fork
pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
qlora-May21st2024
QLoRA: Efficient Finetuning of Quantized LLMs
reciprologs
Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
safari-conv-nets
Convolutions for Sequence Modeling
slurm
Slurm: A Highly Scalable Workload Manager