ollyburren

CHIGP

Capture Hi-C gene prioritiser

cupcake

R Package for PCA analysis of Genome Wide Association Studies (GWAS)

imd-basis

Code related to immune-mediated disease (IMD) PCA basis creation and projection.

useful_scripts

Scripts that I have found useful in everyday work

rCOGS

R package for COGS

pid_thaventhiran_et_al

Code for Primary Immune Deficiency (PID) analysis presented in Thaventhiran et al.

annotSnpStats

repo for R package annotSnpStats

as_basis

Code for analysis of rare complex autoimmune phenotypes

astle

cogs analysis for Will

basis_paper

bcfpid

Retrieve variants form BRIDGE BCF files

blockshifter_simulations

Simulation for assessment of Type 1 error rate for blockshifter

captureHIC

Code and docs for integration of GWAS data with capture HIC

chicp-docker

CHiCP installation using Docker containers

chr1swallace.github.io

Web pages

cogs

Functions to process capture Hi-C calls from CHiCAGO.

cogs_paper

degron

Code for degron analysis

django-chicp

django-elastic

Django search app using Elastic search engine

django-pydgin-auth

Authentication and authorisation app

fyr

mobi_project

scripts associated with mobi capture hi-c project

mscogs

Multi SNP COGS

oldwebsite

A personal website for my code and musings

ollyburren.github.io

Build a Jekyll blog in minutes, without touching the command line.

pid

Code for PID analysis

simBasis

misc code to simulate basis scenarios

simGWAS

Simulating the expected output from a GWAS with a given causal model.

thesis