Oliver Gray's repositories
ANTsPy
A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.
pyradiomics
Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics
deep-disconnectome
This repository contains the trained 3D U-Net model and the code to compute a deep-disconnecotme from a binary lesion file.
bocd
Python implementation of Bayesian online changepoint detection
OCT-Converter
Tools for extracting the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.
ukbb-mri-sseg
UKBB MRI semantic segmentation for Abdominal Dixon and other modalities
Dcm2Bids
Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
NestedCVML_matlab
Machine Learning methods implementing nested cross validation in Matlab
ETL-UK-Biobank
ETL UK-Biobank
TCPDBench
The Turing Change Point Detection Benchmark: An Extensive Benchmark Evaluation of Change Point Detection Algorithms on real-world data
aorta_houghcircle
Generating aorta measurements from pulmonary artery view MRI using hough circles
UKB-connectomics
This repository will host scripts used to map structural and functional brain connectivity matrices for the UK biobank dataset.
bidsify
Tool to convert raw MRI datasets to BIDS-compatible datasets
SOFTX-D-21-00221
onlineBcp: An R Package for Online Change Point Detection using a Bayesian Approach. To cite this Original Software Publication: https://www.sciencedirect.com/science/article/pii/S2352711022000140
ukbb_cardiac
Some code for processing and analysing UK Biobank cardiac MR images.
ukb-cardiac-mri
Weakly Supervised MRI Series Classification for the UK Biobank
changepoint-detection
Online Change-point Detection Algorithm for Multi-Variate Data: Applications on Human/Robot Demonstrations.