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Oliver Clarke (olibclarke)

olibclarke

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Company:Columbia University

Location:New York

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Oliver Clarke's starred repositories

Cryo-MEM

A software for membrane signal subtraction to facilitate high-resolution cryo-EM reconstruction of membrane proteins embedded in their native membrane environment

Language:PythonLicense:GPL-3.0Stargazers:8Issues:0Issues:0

MemXTerminator

A software for membrane analysis and subtraction in cryo-EM.

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:3Issues:0Issues:0

cryosieve

Language:PythonLicense:GPL-3.0Stargazers:42Issues:0Issues:0

spIsoNet

Overcoming the preferred orientation problem in cryoEM with self-supervised deep-learning

Language:PythonLicense:MITStargazers:17Issues:0Issues:0

SIREn

Automated detection of structural blocks in cryo-EM volume ensembles

Language:PythonStargazers:1Issues:0Issues:0

topaz

Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:169Issues:0Issues:0

uglymol

Macromolecular viewer for crystallographers (WebGL)

Language:JavaScriptLicense:MITStargazers:38Issues:0Issues:0

Quiver

Quiver documentation and issue tracker

Stargazers:2260Issues:0Issues:0

process-watcher

Watch Linux processes by polling /proc and notify via email or desktop notification when they complete.

Language:PythonLicense:MITStargazers:127Issues:0Issues:0

coot

Software for macromolecular model-building

Language:C++License:GPL-3.0Stargazers:120Issues:0Issues:0

relion

Image-processing software for cryo-electron microscopy

Language:C++License:GPL-2.0Stargazers:444Issues:0Issues:0