This repository contains linked-read data simulated using the pipeline in this repository:
This data was generated by running the linkedsim pipeline as follows:
export RESOURCES=/path/to/resources
nextflow /path/to/linkedsim/main.nf -resume
Which produces this output file structure (output from tree outs/):
outs/
├── sample1
│ ├── sample1_S1_L001_R1_001.fastq.gz
│ └── sample1_S1_L001_R2_001.fastq.gz
├── sample2
│ ├── sample2_S1_L001_R1_001.fastq.gz
│ └── sample2_S1_L001_R2_001.fastq.gz
└── sample3
├── sample3_S1_L001_R1_001.fastq.gz
└── sample3_S1_L001_R2_001.fastq.gz
3 directories, 6 files