olarerin / metaPlotR

A Perl/R pipeline for plotting metagenes

olarerin/metaPlotR Issues

Error reading chr.fa files during make_annot_bed.pl
Updated 2 months ago
Use of uninitialized value $refseq in exists at rel_and_abs_dist_calc.pl line 55, <BED> line 7666. Use of uninitialized value $mrna_meta in split at rel_and_abs_dist_calc.pl line 53, <BED> line 7667.
Updated 2 months ago
issue about rel_and_abs_dist_calc.pl
Updated 9 months ago
Could not open chroms//chr1_KN196472v1_fix.fa: No such file or directory
Updated 9 months ago1
Excluded (features not well defined or gene not found in gtf):
Updated 2 years ago1
make_annot_bed.pl failed
Closed 3 years ago1
some species do not have Gencode data
Updated 3 years ago
Why are metaplotr gene lengths so divergent from Gencode hg38 GTF gene lengths?
Updated 3 years ago2
Could not read file 'mouse/</TITLE>.fa': No such file or directory
Closed 4 years ago5
Computation of the distances
Updated 3 years ago1