oiiio's repositories
Personal-Drugs
Our PG browser
variantsearch
search for variants (variantsearch.com)
23andMeToReporter
Converts 23AndMe raw to a really funky QuantStudio file
clinrisk-modules
ClinRisk risk prediction algorithms for use in clinical care.
doi
nofe.me doi resolution and reader rendering
FHH
This is the repository for the HTML5 version of the Family Health History Tool
flask-swaggerui
This library provides python Flask utilities and static assets for rendering Swagger UI.
flywheel
Object mapper for Amazon's DynamoDB
helix-python
Python module to access Helix's API
HSDN
Maps symptom and disease terms to MeSH IDs
InterVar
A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
patrons
Patron of Science page for kickstarter backers
PharmCAT_ddna
ddna pharmcat
Post_imputation_pipeline
Pipeline to add genotyped SNPs back post-imputation (specifically, post-imputation with BEAGLE v4 or later)
pynnotator
This is a Genome Annotation Framework developed with the goal of annotating VCF files (Exomes or Genomes) from patients with Mendelian Disorders.
reader-for-lens
The reader functionality meant for the Lens HTML
stringMLST
Fast k-mer based tool for multi locus sequence typing (MLST)
SubSampleFastq
A simple program that will "randomly" sub sample a fastq file.
synthea
Synthetic Patient Population Simulator
weasyprint_lambda
Dockerfile image that builds AWS Lambda Layer with native libraries for running WeasyPrint HTML to PDF renderer