This repository provides a jupyter notebook file to run MEGADOCK on the Google Colaboratory environment.
Try to use!
- PDB ID version
(Code: MEGADOCK_on_Colab.ipynb) - PDB file upload version
(Code: MEGADOCK_on_Colab_myPDB.ipynb)
MEGADOCK is an protein-protein docking/interaction prediction software using FFT-grid-based docking.
- Masahito Ohue, Ph.D. (Assistant Professor, Tokyo Institute of Technology)
- Ohue M. MEGADOCK-on-Colab: an easy-to-use protein-protein docking tool on Google Colaboratory. BMC Research Notes, 16:229, 2023. https://doi.org/10.1186/s13104-023-06505-w
- MEGADOCK software: https://github.com/akiyamalab/MEGADOCK
MEGADOCK and MEGADOCK-on-Colab are licensed by CC BY-NC 4.0. These software and derivatives are NOT allowed for any commercial use without formal prior authorization. Please contact us about commercial use. If you are considering commercial use, please contact us as there are differently charged use options licensed by Ahead Biocomputing, Co. Ltd., a private company as a Tokyo Tech Venture.
