Oregon Health and Science University Computational Biology

tesseract

Python lib for remote code execution via the GA4GH TES API

mIHC-ML

Machine learning for mIHC

wdl-pcawg-sanger-cgp-workflow

WDL implementation of https://github.com/ICGC-TCGA-PanCancer/CGP-Somatic-Docker

aracne

Wrapper scripts for Aracne-AP, "Network Reverse Engineering through AP inference of Mutual Information"

gaia_mutex_integration

neoepitope_novelty

Tools for annotating neoepitope predictions for focus on peptide novelty

ohsu-comp-bio.github.io

ohsu-comp-bio.github.io website.

rockefeller_metabolomics

viper

Wrapper scripts for viper's network regulator analysis and reporting.

birdseed2vcf

Convert birdseed variant file with genotypes to a VCF file

birdsuite

cedar-gwas

common-workflow-language

Repository for CWL Specfications

cromwell

Workflow Execution Engine using WDL

cytomine-utils

Utility scripts for Cytomine

data-object-schemas

A repository for the schemas used for the data object service.

docker-centos-slurm

Slurm Docker Container on CentOS 7

ensembl-rest

rest container for ensembl services

fast-data-dev

Kafka Docker for development. Kafka, Zookeeper, Schema Registry, Kafka-Connect, Landoop Tools, 20+ connectors

GalaxyKickStart

Ansible playbooks for Galaxy Server deployment

galaxytools

utilities packed Galaxy tool wrapper

guppy

indexd

Prototype index service server.

kafka-connect-directory-source

labkey-docker

Docker container for LabKey.

mortar

tes

Task Execution Schema (TES) library.

tesnotebookspawner

Custom Spawner for Jupyterhub to start servers in systems conforming to the GA4GH task execution schema

tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission

tools-morinlab

Galaxy Tool Shed repositories maintained and developed by the Morin Lab.