Owen Solberg's repositories
biocozy_bin
Bioinformatic tidbits
biocozy_blog
hugo site for biocozy.net
biocozy-attic
nothing to see here
virominer
Bioinformatic pipeline for the discovery of novel viruses using high throughput sequencing data
COSMOS2
Python Scientific Pipeline Management System
cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
cutadapt
Cutadapt removes adapter sequences from sequencing reads
django-skeleton
Django and postgres inside of vagrant
five-dollar-genome-analysis-pipeline
Workflows used for germline short variant discovery in WGS data
holoviews
With Holoviews, your data visualizes itself
igv.js
Embeddable genomic visualization component based on the Integrative Genomics Viewer
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
patterns
A curated collection of Nextflow implementation patterns
prefect
Prefect is a workflow orchestration tool empowering developers to build, observe, and react to data pipelines
scikit-image
Image processing in Python
singularity
Singularity: Application containers for Linux
spack
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
spacktree
automated deployment of spack application tree
tensorflow_docs
TensorFlow documentation
virominer2
A Snakemake based workflow for automatic filtering, assembly, and annotation of viral genomes present in metagenomic data