Oscar Davalos's repositories
merced-weather
Use Github Actions to automatically update a weather graph every day
ACTINN-PyTorch
An easy-to-use PyTorch implementation of Automatic Cell-Types Identification of single-cell RNA sequencing using Neural Networks (ACTINN) [Ma et al].
bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
CD8_Follicular_Analysis
Scripts for reproducing the RNAseq analysis performed in "CD8 follicular T cells localize throughout the follicle during germinal center reactions and maintain cytolytic and helper properties."
DavalosHeydari_scANNA
Scripts for scRNAseq preprocessing, data analysis, and figure generation for Davalos & Heydari et al. (2023)
N-ACT
The public repository for N-ACT: An Interpretable Deep Learning Model for Automatic Cell Type and Salient Gene Identification
DeepLearningGroup
A repository for hosting links and resources presented during the Deep Learning Group (Fall 2021).
khroma
:art: Colour Schemes for Scientific Data Visualization
machine-learning-book
Code Repository for Machine Learning with PyTorch and Scikit-Learn
manuscript-templates
LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.
merced-weather-py
This repository creates a daily updated weather graph using python, and it is a recreation of the merced-weather repository.
N-ACT-TrainingScripts
A repository to host the main scripts for training (and pre-training) N-ACT
publication_perfect
Six hour hands-on to creating publication-quality plots in R
r
Using R with Jupyter / RStudio on Binder
resume
Software developer resume in Latex
scANNA
The main repository hosting the implementation of scANNA (single-cell ANalysis using Neural Attention)
SCP
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
scSplit
Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples within a mixed population.
SoftAdapt
Implementation of the SoftAdapt paper (techniques for adaptive loss balancing of multi-tasking neural networks)
stable-diffusion
A latent text-to-image diffusion model
stablediffusion
High-Resolution Image Synthesis with Latent Diffusion Models
stat_rethinking_2022
Statistical Rethinking course winter 2022
trvae-pytorch
remake of trvaep due to original having possible circular import
turboGliph
R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identify specificity groups in the T cell receptor repertoire based on local (motif sharing) and global (hamming distance) similarities.
Tutorials
This Repository will host basic Tutorial for getting started with SingleCell Analysis in Python