Open Source Software for Epidemiology

opal

OBiBa’s core database application for biobanks or epidemiological studies.

mica2

Mica is a web portal for epidemiological study consortia.

docker-opal

magma

Data and meta-data abstraction layer.

obiba-commons

Reusable code for persistence (hibernate), security, spring and wicket.

agate

OBiBa's user ID provider.

rock

R server with a REST API

opal-doc

Opal documentation

amber

Data collection server

amber-studio

Content management app for Amber

docker-agate

docker-r

Docker image with R inside and a lot of system libs

agate-doc

Agate documentation

amber-doc

Amber documentation

amber-visit

Amber client app for collecting interview data

docker-amber

Docker images for Amber server and apps

docker-mica

docker-rock

Rock R server in a Docker container

magma-datasource-spss

Magma datasource to read SPSS files

mica-doc

Mica documentation

mica-python-client

Python command lines for accessing Mica web services.

mica-search-es

Mica search plugin based on Elasticsearch

mica-search-es7

mica-search-es8

mica-tables-spss

Mica study table source plugin based on a SPSS file

micar

R package for accessing Mica2 web services

obiba-home

Obiba development environment

obiba.github.io

Obiba Website

plugins

OBiBa plugins repository

rock-doc

Rock R server documentation