Oliver Barnstedt's repositories
LINdoscope2023
Notebooks and code for the 2023 EMBO course on imaging and data analysis
caiman-tools
Tools for working with CaImAn (Giovannucci et al., 2019, eLife)
septum-vta
Repository containing code for Mocellin et al., Neuron (2024)
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Language:PythonGPL-2.0000
CEBRA
Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA
Language:PythonNOASSERTION000
CEBRA-demos
CEBRA Demo Notebooks. Please see all of them at the URL below:
Language:Jupyter NotebookNOASSERTION000
lindoscope-2021
Course content for the lindoscope data analysis labs
Language:Jupyter Notebook000
MouseFlow
A Python toolbox to quantify facial and bodily movement in headfixed mice.
Language:Jupyter NotebookLGPL-3.0000