nvt-1009's repositories
ampvis2
Tools for visualising amplicon data
animl
Animl comprises a variety of machine learning tools for analyzing ecological data. The package includes a set of functions to classify subjects within camera trap field data and can handle both images and videos.
anvio
An analysis and visualization platform for 'omics data
BES2020GLLVMworkshop
GLLVM Workshop material for the BES 2020 Festival of Ecology
biovcnet.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
ComplexHeatmap
Make Complex Heatmaps
ENMTools
ENMTools R Package
ESMValTool
ESMValTool: A community diagnostic and performance metrics tool for routine evaluation of Earth system models in CMIP
EUKulele
Automatic eukaryotic taxonomic classification
gllvm
Generalized Linear Latent Variable Models
IRSAE2021GLLVMworkshop
GLLVM Workshop material for IRSAE 2021
isb_course_2021
Materials and presentations for the 2021 ISB Virtual Microbiome Series.
isb_course_2023
Materials and presentation for the 2023 ISB Microbiome course.
Krona
Interactively explore metagenomes and more from a web browser.
microbiome
microbiome R package
microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
MIDAS
An integrated pipeline for estimating strain-level genomic variation from metagenomic data
pcmdi_metrics
Self contained packages to run PCMDI Metrics
Phinch
Phinch is a data visualization framework aimed at promoting novel explorations of large biological datasets (microbiomes, metagenomes, etc.). Features include support for HDF5 and JSON BIOM files, retooled visualizations, improved image export and sharing, and the ability to work offline.
RangeShiftR-package
An R package as interface to the RangeShifter simulation platform
sepp
Ensemble of HMM methods (SEPP, TIPP, UPP)
seqtk
Toolkit for processing sequences in FASTA/Q formats
swarm
A robust and fast clustering method for amplicon-based studies
tidyMicro
tidyMicro GitHup Repository
tidytuesday
Official repo for the #tidytuesday project
training-material
A collection of Galaxy-related training material