nurlicht's repositories
Volumetric-3D-Stitching
Filling the 3D 'scattering volume' by appropriately-oriented 2D scattering patterns. An analytical model suggests a numerical procedure (using Diffusion Map and the fisrt 9 non-trivial eigenvectors). The Matlab code here 1) synthesizes 2D scattering patterns; 2) Forms the Distance Matrix of mimages; and 3) retrieves the (relative) orientations using the DIstance Matrix.
3D-Visualization-for-Cell-Biologists
Lecture Materials and many embedded exercises (ImageJ, UCSF Chimera, X3DOM, Three.js)
Analytical-3D-Models-Icosahedral-Shells
Model-based few-parameter volumetric 3D reconstruction of virus structures (capsids)
Generative-AI
Frontend client for image generation with OpenAI
Two-Level-Segmentation
Detection of the full connected shape of bright spots (amid background and dimmer spots)
An-introduction-to-Matlab-for-Life-Scientists
Quick-Start for life scientists willing to use Matlab (for fluorescence microscopy, mass spectrometry, x-ray crystallography, single-particle electron microscopy, kinetics ...).. No background in programming is required.
Apache-Kafka-to-go
Easy to run demos for Apache/Confluent Kafka and tools (ex. efficient search of documentation)
Java-Spring-Server
Web server with Java and Spring (AI, Kafka, Security, Database ...)
spring-ai
An Application Framework for AI Engineering
TensorFlow
Interactive data generation and fitting with the AI platform TensorFlow.js
VTK_PCL_Cpp_3D
Higher-level architectures for using 3D C++ APIs
CellulyzerDemo
Automated tracking and interactive visualization/simulation of select cellular processes
DatabaseViewer
Automated access to MySQL databases with Java.sql and browsing them with Javax.swing
ImageJ-Workflow
Block-Diagram (XML) model of an application-level ImageJ program and an intrinsic visual editor for defining, loading, editing, and running such models
Noise-Robust-Flood-Fill
Masking an image locally, based on mouse-defined 'seed points' and selecting connected areas including the seed points. Two-level thresholding provides noise-robustness.
Object-Detection-with-OpenCV
Interactive and Automated (Classical) Object-Detection with OpenCV
OpenCV
Automated linking of spots in consecutive frames based on their Distance Matrix, plus interactive visualization