NU Malaria Modeling Team's repositories
covid-chicago
Simulating and analyzing Covid-19 transmission and hospital trends per region in Illinois.
chicago_sentinel_surveillance
Tracking changes in SARS-CoV-2 transmission with a novel outpatient sentinel surveillance system in Chicago, USA.
FE-2023-examples
Example scripts for 2023 faculty enrichment program in applied malaria modeling at Northwestern
hbhi-nigeria-publication-2021
Code and data for modeling analysis and shiny app associated with the manuscript titled 'Application of mathematical modeling to inform national malaria intervention planning in Nigeria'
Burkina-trends-routine-data-publication-2021
Project directory for BFA trends paper
faculty-enrich-2022
Training materials for the faculty enrichment program 2022
faculty-enrich-2022-examples
Example code for the faculty enrichment program 2022
FE-2023-quarto-website
A quarto website for the 2023 Faculty Enrichment Program
STL-routine_data-clean
Project repo for STL on routine case data from Burkina Faso
covid-chicago-surveil
Code for simulating SARS-CoV-2 transmission in the sentinel surveillance paper (Toh et al. 2022)
ICUtrigger_covid_chicago_paper_2022
Modeling robust COVID-19 intensive care unit occupancy thresholds for imposing mitigation to prevent exceeding capacities.
indie_emodpy
Setting up INDIE modeling workflow using emodpy
seasonality_setup
combining Ben's bf-seasonal fitting code with tobias' project-template
urban-malaria-dhs-publication-2022
Data and analysis scripts for examining factors associated with malaria test positivity in urban areas