NTU BioMedical Systems Engineering Lab's repositories
mmsb-bebi-5009
Mathematical Modeling for Systems Biology
mitochondria-retrograde-model
Mitochondria Retrograde (RTG) Signalling model
mitodyn-ode
Code for mitochondrial dynamics ODE manuscript.
bulk_rnaseq
A pipeline of analyzing bulk RNAseq data
mmsb-metanet
Metabolic network and flux balance analysis for Mathematical modeling of systems biology
APHRS2018-WenWei
Source code for APHRS 2018 Taipei. Presenter: WenWei Tseng
cell-cycle-huang
Cell cycle phases classification by Chi-Rong Huang
mito-network-sharing
Sharing of contents on mitochondrial encounter networks
Mitochondrial-Network-Model
Mitochondrial Network Agent-based Model by Chu and Tseng
mitodyn-data
Data for the beta cell mitochondrial dynamics
MitoRetroDynamics
Source code for the article: "Mathematical Model for the Study of Mitochondrial Retrograde Signaling Dynamics"
MitosisClassification
Final project of Deep Medical Image Analysis
mmsb-bebi-5009-python
Python notebooks for Mathematical modeling for Systems Biology
ReportTex
A LaTeX template for reports. Supported by Tectonic/Github CI/makefile
RetroSignalModel.jl
Original: https://github.com/stevengogogo/RetroSignalModel.jl
camkii-cardiomyocyte-model
Moritti et al. (2014) cardiomyocyte model and CaMKII dynamics
ecme-model-descriptor
Model descriptors for ECME (Electrophiology-Contraction and Mitochondrial Energetics) model
ecme-rirr-dox
Cardiomyocyte electrophysiology and bioenergetics model with doxorubicin perturbation
intro-github-vscode
Lab introduction to Git, GitHub, and VS Code
ML-RNA-Seq
Transcriptome and machine learning analysis of the impact of COVID-19 on mitochondria and multiorgan damage
rnaseq_rtg_expression
Visualize retrograde signalling (RTG) protein expressions from RNAseq data