nsyzrantsev

barkit

A tool for handling NGS barcodes in FASTQ files

algorithms_1

algorithms_2

algorithms_3

BeadArrayFiles

Python library to parse file formats related to Illumina bead arrays

FLASH2

Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for amplicons

nsyzrantsev

Config files for my GitHub profile.

regex

An implementation of regular expressions for Rust. This implementation uses finite automata and guarantees linear time matching on all inputs.

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

scanpy

Single-cell analysis in Python. Scales to >1M cells.

transcriptome_data_analysis

tre-regex

Safe Rust bindings to the TRE regex engine

tre-regex-sys

Raw bindgen bindings for the TRE regex library