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Nicolas Servant's repositories

HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

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cancer-hic-norm

Normalization of cancer Hi-C data

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nf-core-hic

Analysis of Chromosome Conformation Capture data (Hi-C). Main fork @

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MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

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This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/HiTC.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=HiTC.

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modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

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multi-package-containers

Testing building mulled containers for multi-requirement tools.

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test-datasets

Test data to be used for automated testing with the nf-core pipelines

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ATAC-seq

Basic workflow for ATAC-seq analysis

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cooler

A cool place to store your Hi-C

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daviddarnes.github.io

🌐 My site for showing experiments, tools and other projects

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defuse

An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data

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EMTiron

Data analysis project of the study "CD44 regulates cellular plasticity by mediating iron endocytosis". Müller, Sindikubwabo et al. 2019

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github-metadata

Jekyll plugin to propagate the `site.github` namespace and set default values for use with GitHub Pages.

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HiCDataHumanIMR90

HiCDataHumanIMR90 BioC data package

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iced

Normalizing Hi-C contact counts efficiently

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MultiQC_TestData

Test data for MultiQC. See https://github.com/ewels/MultiQC

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nf-co.re

Files for the main nf-core website >>>

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nf-website

Nextflow public web site

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NGI-smRNAseq

Nextflow Small RNA Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

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rnaseq

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control

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Sarek

Detect germline or somatic variants from normal or tumour/normal whole-genome sequencing data

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SNPsplit

Allele-specific alignment sorting

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