nscherf / TGMMlibraries

TGMMlibraries

This libraries allows to read and work with lineage trees produced by TGMM tracking algorithm described in Fernando et al. 2014.

Description of the repository

• TGMMlibraries: folder containing the package
• setup.py: Installation script
• README.md: This file
• LICENCE: The licence describing file

Basic usage

Once installed the library can be called the following way (as an example):

from TGMMlibraries import lineageTree

Dependencies

Some dependecies are requiered:

• general python dependecies:
  • numpy, scipy

Quick install

To quickly install the script so it can be call from the terminal and install too the common dependecies one can run

python setup.py install [--user]