novoalab / nanoRMS

Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* et al., Nature Biotech 2021)

novoalab/nanoRMS Issues

How to make files like RNA_Mod_Positions_rRNAYeast.tsv in other species
Closed a year ago2
modpos
Closed 2 years ago7
Ouput from Pseudou_prediction_pairedcondition_transcript.R
Closed 2 years ago4
modpos file missing
Closed 2 years ago6
Epinano-RMS
Closed 2 years ago1
CSV file for human transcriptome
Closed 2 years ago2
Move and trace files
Closed 2 years ago3
RNA modification stoichiometry estimation using Tombo resquiggling
Closed 3 years ago2
psU Prediction
Closed 2 years ago6
Writing csv from epinano_rms.py takes a long time
Closed 2 years ago
ValueError: Columns must be same length as key
Closed 3 years ago7
Problem with epinano_rms.py
Closed 2 years ago1
what are the meaning of Guppy output fast5 files's trace and move dataset?
Closed 2 years ago1
per_read/get_freq.py: The error message says "[ERROR] -m/--mincov must be at least 5!", but the check is for at least 10.
Closed 2 years ago1
Error occured durin epinano_rms.py command
Closed 2 years ago1
FileNotFoundError: [Errno 2] No such file or directory
Closed 2 years ago2
Error in Running Epinano-RMS
Closed 2 years ago2
Create sequence dictionary
Closed 2 years ago1
Object mask error
Closed 2 years ago4
TypeError: write() takes exactly one argument (2 given)
Closed 2 years ago8
modification stoichiometry estimation using Nanopolish resquiggling
Closed 2 years ago1
Error in get_trace_for_reference_bases while running get_features.py
Closed 2 years ago2
About the directionality of the stoichiometry change
Closed 3 years ago7
Nothing output after running a day
Closed 3 years ago1
Nothing output to bam file when running step 3. RNA modification stoichiometry estimation using Tombo resquiggling
Closed 3 years ago
Nothing output in bam file when running step 3. RNA modification stoichiometry estimation using Tombo resquiggling
Closed 3 years ago
code in get_features.py
Closed 3 years ago1
per_reads/get_freq.py show constant high KNN value through all positions
Closed 3 years ago3
About mkae a RNA_Mod_Positions file
Closed 3 years ago4
ggplot error
Closed 3 years ago
Extra period in .{}.done_splitting?
Closed 3 years ago5
get_features.py: cannot convert float NAN to integer
Closed 3 years ago1
mod file missing from Pseudou_prediction_singlecondition.R
Closed 3 years ago4
Syntax error in epinano_rms.py
Closed 3 years ago
getting error at "RNA modification stoichiometry estimation using Tombo resquiggling"
Closed 4 years ago4