novapyth's repositories
apptainer
Apptainer: Application containers for Linux
bamSliceR
Slice and dice controlled-access BAMs for thousands of samples
BGC_marine_derived_Aspergillus_ruber
Biosynthetic gene clusters of marine derived Aspergillus ruber
Bioinformatics_Python_Cookbook_3rd_1022
Bioinformatics with Python Cookbook, Third Edition
biomakefiles
Library makefiles for various bioinformatic tools.
cnvkit
Copy number variant detection from targeted DNA sequencing
CVTree
A whole-genome and alignment-free prokaryotic phylogeny tool
data.table
R's data.table package extends data.frame:
data_explorations
data explorations - examples by examples
ExpansionHunterDenovo
A suite of tools for detecting expansions of short tandem repeats
FIREVAT
FInding REliable Variants without ArTifacts
funcscan
(Meta-)genome screening for functional and natural product gene sequences
Genomic_data_Pseudomonas
Genomic data of Pseudomonas sp. isolated from municipal sewage water
grid-engine
An exceptional plugin for grid-based features in the Phaser 3 framework.
MetaSTAAR
An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
minfi
Devel repository for minfi
MoCaSeq
Analysis pipelines for cancer genome sequencing in mice.
novapyth
Config files for my GitHub profile.
PowerToys
Windows system utilities to maximize productivity
Py4Bio
Public data for the book Python for Bioinformatics
Python-Data-Analysis-Third-Edition
Python Data Analysis, Third Edition, Published by Packt
running_process_in_parallel
Running a process in parallel
SNVCallingWorkflow
The DKFZ-ODCF, formerly DKFZ/eilslabs SNV-Calling Workflow
STRling
Detect novel (and reference) STR expansions from short-read data
tmap
A very fast visualization library for large, high-dimensional data sets.
TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
TSVview
TSV viewer with some editing and statistics functionality