AlexCH Liu's repositories
tapestri.tools
A toolbox for the analysis of tapestri single cell multi-omics data
Accessory.Crispr
Comprehensive search for accessory proteins encoded with archaeal and bacterial Type III CRISPR-Cas gene cassettes reveals 39 new cas gene families
CHM13
The complete sequence of a human genome
cpython
The Python programming language
CRISPRdisco
CRISPR discovery pipeline
CRISPRscreen
Light weight Shiny app to interactively analyze CRISPR screen result from the mutant IDH1 project.
sgFindR
Script to order sgRNAs that target -input <.fasta> from IDT
cyto_plot.Troubleshoot
A case where 'stats' in 1D & 2D cyto_plots give different values.
CytoExploreR_archive
Interactive Cytometry Data Analysis
drawCell
R package to create cell pictures.
ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
Fantasy-Football-Models
Beating the shit out of my friends with data science
gallery
Gallery of ggplot2 extensions
knowledgebase
recipes that save time
protein_generator
Joint sequence and structure generation with RoseTTAFold sequence space diffusion
rethinking
Statistical Rethinking course and book package
rms
Regression Modeling Strategies
Sanity
Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
SIMLR
Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/nmeth.4207
vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms