noporpoise

BitArray

C bit array structs and methods

seq-align

Fast, portable C implementations of Needleman-Wunsch and Smith-Waterman sequence alignment

sort_r

Portable qsort_r / qsort_s

jelly-hash

Low memory multithreaded hash table

msg-pool

Multiple Producers / Multiple Consumers Message Passing Pool

string_buffer

libstrbuf: A powerful string library for C

seq_file

Library for Reading Bioinformatic Sequence Data in C

carrays

Algorithms that work on generic C arrays

madcrowlib

Common C data structure macros

UtilityLibrary

C Code for Good Housekeeping

biogrok

Bash scripts for everyday bioinformatics

CortexLib

Library code for handling data from the cortex variant caller

readsim

Simulate DNA sequencing reads using real reads

bioinf-perl

Perl libraries and scripts for everyday bioinformatics tasks, including VCF, FASTA & FASTQ handling

cortex_binary_reader

Read cortex graph files (historic page, use McCortex view instead)

cpp_priority_heap

Simple priority heap with updatable priorities in c++11

GenomeDensity

Density of events around objects on a genome

pyRBT

Red Black Tree in Python

strtools

Small command line tools for manipulating strings

thumper

A small tool to check file systems

vcf-hack

Hack-y C programs for modifying VCF files

vcf-slim

Light weight VCF annotation and filtering

dotfiles

Useful bash scripts for your .profile file

GFA-spec

Graphical Fragment Assembly (GFA) Format Specification

htslib

C library for high-throughput sequencing data formats

htslib-test

tensorflow

Computation using data flow graphs for scalable machine learning