Cheng Tan's repositories
genesis_cg_tool
Prepare topology and coordinate file for CG models in Genesis.
gen_input_cg_gro
Generate 3SPN DNA model files for MD in the format of GRO.
genesis-mode
Emacs Genesis-mode for user-friendly reading and writing Genesis input files.
respac_batch
Simple script to perform RESPAC calculations (including APBS) for coarse-grained protein charge distributions.
alphafold
Open source code for AlphaFold.
cgnet
learning coarse-grained force fields
dired-plus
Extensions to Dired
dssp
Application to assign secondary structure to proteins
eat_tensorflow2_in_30_days
Tensorflow2.0 🍎🍊 is delicious, just eat it! 😋😋
esnippets
my emacs snippets
genesis_cg_document
Documentation of the CG models used in the MD package GENESIS.
genesis_cg_input_python
Prepare CG topology and coordinate files for Genesis.
handson-ml3
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
hmm_tutorials
Hands-on tutorials for Markov state modeling of MD and EXP data
machine-learning-articles
🧠💬 Articles I wrote about machine learning, archived from MachineCurve.com.
maxima-jupyter
A Maxima kernel for Jupyter, based on CL-Jupyter (Common Lisp kernel)
mldl-md-dynamics
A repository of update in molecular dynamics field by recent progress in machine learning and deep learning.
my_dict
一款中英文词典
noinil
Config files for my GitHub profile.
Oimo.js
Lightweight 3d physics engine for javascript
practicalAI
📚A practical approach to learning and using machine learning.
protein_DNA_PWMcos_modeling
Some MD files for simulating sequence specific recognition of DNA targets by proteins using the PWMcos model. (produced with CafeMol)
python-parallel-programming-cookbook-cn
📖《Python Parallel Programming Cookbook》中文版
symbol-overlay
Highlight symbols with keymap-enabled overlays