noecrespopr84

0

followers

0

following

stars

noecrespopr84's starred repositories

MutualInfo

The program to perform mutual-information based analyses on SELEX sequencing reads

Language:R100

ProNA2020

ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence

Language:Python1400

GraphSite

GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures

Language:PythonMIT5200

seq2science

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

Language:PythonMIT14900

lcdb-wf

Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis

Language:Python2000

Bioinformatics-Workshops

Workshops presented by the Gladstone Bioinformatics Core

Language:HTML17400

controlled-peptide-generation

source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molecular Dynamics"

Language:PythonApache-2.09600

Peptides

An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.

Language:R7800

PeptideBuilder

A simple Python library to generate model peptides

Language:PythonMIT7600

iScore

iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines

Language:PythonApache-2.02600

DockQ

DockQ is a single continuous quality measure for protein docked models based on the CAPRI evaluation protocol

Language:PythonMIT18600

cyclic-peptides

Cyclic-peptide - protein complexes benchmark and associated scripts and data

Language:ShellApache-2.0600

GNN_DOVE

Code for "Protein Docking Model Evaluation by Graph Neural Networks"

Language:PythonGPL-3.05600

2020_scWorkshop

Code and data repository for the 2020 physalia course on single cell RNA sequencing.

Language:Shell5400

2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF

2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF

Language:HTMLApache-2.03500

RNASeq

RNASeq pipeline

Language:Perl3500

galaxy-rna-workbench

Galaxy RNA workbench

Language:HTMLMIT3800

xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing

Language:PythonMIT13100

RNAseq-workflow

A repository for setting up a RNAseq workflow

Language:R39600