NoahWex

scDblFinder

Methods for detecting doublets in single-cell sequencing data

scib-pipeline

Snakemake pipeline that works with the scIB package to benchmark data integration methods.

BigSurR

hbca

Code used to process the data of the HBCA project

squidpy

Spatial Single Cell Analysis in Python

Brain-sim

Simulate the C. Elegans worm brain in your browser and interact with the worm as it moves around

every-chatgpt-gui

Every front-end GUI client for ChatGPT

scGPT

ddqc

Biology-centered data-driven quality control for scRNA-seq

zellkonverter

Conversion between scRNA-seq objects

BigSur

ctv-AnomalyDetection

CRAN Task View: Anomaly Detection with R 🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛒🛍️🛒🛒

anomaly-detection-resources

Anomaly detection related books, papers, videos, and toolboxes

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

scRNA-seq_online

Libra

datacamp-community-tutorials

Tutorials for DataCamp (www.datacamp.com)

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

SpaGE

Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data

seurat-wrappers

Community-provided extensions to Seurat

seurat

R toolkit for single cell genomics

DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

SpatialMouseAtlas2020

Data processing and analysis scripts for our spatial profiling of embryos using seqFISH