Nicholas Noll's repositories
tissueAnalysisSuite
A complete set of MATLAB code to segment live-image movies of developing epithelial tissues, track cellular flows, and infer intercellular stresses.
vertexModelSimulation
Simulates a growing, dividing epithelial tissue under the active tension network model, as well as under finite pressure differentials.
basel_carbapenemases
Includes all code necessary to reproduce the analysis of our 2018 comparative genomic analysis of Carbapenemase producing bacteria isolated in Basel.
Language:Python000
freetype2
Customized freetype2 library
Language:C000
plasmids
For nextstrain
Language:Python000
pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
Language:CMIT000
seqancy
A custom wrapper for the seqan library, exposed to python via cython.
Language:C++000